| Stage | Agent | Special Agent | Perfect Agent |
| dataDyne Central - Defection | 0:33 PA |
0:44 EG |
2:24 PA |
| dataDyne Research - Investigation | 1:32 BKCZDRDMPA SH |
2:18 PAXX |
2:51 PA |
| dataDyne Central - Extraction | 1:09 DCPA |
1:37 IN |
1:49 INWM |
| Carrington Villa - Hostage One | 1:16 MHPA |
1:30 PA |
1:49 PAXX |
| Chicago - Stealth | 0:16 CCDRDCEGGG PASZ |
0:29 DC |
0:31 DCSU |
| G5 Building - Reconnaissance | 0:47 PASD |
0:56 PA |
1:08 PA |
| Area 51 - Infiltration | 1:15 SD |
1:51 DCPA |
2:11 PA |
| Area 51 - Rescue | 1:33 DC |
2:32 PA |
3:14 XX |
| Area 51 - Escape | 2:35 DC |
3:43 PA |
3:51 PA |
| Air Base - Espionage | 1:19 DCPA |
1:54 DCPASD |
2:23 PA |
| Air Force One - Antiterrorism | 0:58 BKDCEGGDIN NGSDSU |
1:25 IN |
1:34 INSU |
| Crash Site - Confrontation | 1:25 DCFAXX |
1:36 FA |
2:08 PA |
| Pelagic II - Exploration | 0:56 SD |
1:59 XX |
2:22 XX |
| Deep Sea - Nullify Threat | 3:13 SD |
4:28 XX |
3:31 XX |
| Carrington Institute - Defense | 0:55 DH |
1:35 DCPA |
1:56 DC |
| Attack Ship - Covert Assault | 2:22 PA |
2:52 PA |
3:44 PA |
| Skedar Ruins - Battle Shrine | 1:26 SD |
1:45 DH |
1:59 DHPA |
| Mr. Blonde's Revenge | 1:33 DC |
1:39 DCXX |
1:41 PASD |
| Maian SOS | 1:47 DC |
2:12 DCINSUXX |
2:19 DRPA |
| WAR! | 0:27 DC |
0:51 DCWM |
0:59 DC |
| The Duel | 0:03 ABADAMBBBD BZBCBKBGCZ CCCHCFCPCR DMOTDSDBDH DODRDTDSDG DCDMDSEGFA FDFFFCGPGG GDHIINICJV JUKAKMKJLA LMMMMHMKMI MNNENBNGPA PMPSPFGEP1 DLPHPPPIPZ PNPRQMRWRO RDSBSCSPSZ SHSSSESTSS SKSLSDSNSK SMSTSUDVTF TJTEUGUMUR WMXXYA |
0:06 AMBZBKDHDR DTDCEGGGGD INPAPSPRSZ SHSSSDSKSM SUXX |
0:09 DR |
| Combined Time | 27:20 | 38:02 | 44:33 |
| Rank | Player | Agent | Special Agent | Perfect Agent | Total |
| 1 | ParagonX9 | 2031 | 2046 | 2055 | 6132 |
| 2 | Discombobulator | 2047 | 1999 | 1936 | 5982 |
| 3 | ExpertGamer | 1994 | 1974 | 1946 | 5914 |
| 4 | xXDarkLightXx | 1870 | 1983 | 1972 | 5825 |
| 5 | SnapDragon | 2028 | 1920 | 1845 | 5793 |
| 6 | Sucram | 1914 | 1911 | 1897 | 5722 |
| 7 | PerfectDarklich | 1933 | 1842 | 1918 | 5693 |
| 8 | Marshmallow | 1842 | 1842 | 1929 | 5613 |
| 9 | Shock | 1826 | 1840 | 1858 | 5524 |
| 10 | Infiltrater | 1884 | 1841 | 1708 | 5433 |
| 11 | Gamingguru507 | 1780 | 1723 | 1629 | 5132 |
| 12 | DarkHawk | 1603 | 1706 | 1765 | 5074 |
| 13 | Le Manchot | 1713 | 1745 | 1542 | 5000 |
| 14 | Falcon | 1656 | 1656 | 1652 | 4964 |
| 15 | Steven | 1616 | 1671 | 1562 | 4849 |
| 16 | ShadowZero | 1758 | 1732 | 1356 | 4846 |
| 17 | GohanDZ | 1687 | 1464 | 1519 | 4670 |
| 18 | Ngamer64 | 1524 | 1578 | 1565 | 4667 |
| 19 | IronCurtain | 1583 | 1459 | 1622 | 4664 |
| 20 | PillowHead | 1579 | 1514 | 1570 | 4663 |
| 21 | SpyMonkey | 1583 | 1486 | 1590 | 4659 |
| 22 | DarkRyan | 1578 | 1474 | 1556 | 4608 |
| 23 | PrimeNumber | 1487 | 1513 | 1583 | 4583 |
| 24 | KillMaster | 1541 | 1595 | 1439 | 4575 |
| 25 | captZEEbo | 1795 | 1539 | 1221 | 4555 |
| 26 | PDsurf | 1565 | 1497 | 1490 | 4552 |
| 27 | Wes McKinney | 1692 | 1596 | 1159 | 4447 |
| 28 | Roco | 1711 | 1308 | 1278 | 4297 |
| 29 | TheJedi | 1222 | 1401 | 1549 | 4172 |
| 30 | Mikers | 1424 | 1380 | 1358 | 4162 |
| 31 | Yako | 1441 | 1647 | 1026 | 4114 |
| 32 | Ringwraith7 | 1393 | 1332 | 1360 | 4085 |
| 33 | Rudie | 1456 | 1303 | 1207 | 3966 |
| 34 | MODnike18 | 1026 | 1334 | 1574 | 3934 |
| 35 | Sephiroth702 | 1388 | 1127 | 1324 | 3839 |
| 36 | Sim Threat | 1514 | 1190 | 972 | 3676 |
| 37 | DarkOne | 1226 | 1385 | 973 | 3584 |
| 38 | Trent Easton | 1062 | 1165 | 1298 | 3525 |
| 39 | Kazno | 1182 | 995 | 1239 | 3416 |
| 40 | Ultimate G | 1188 | 1162 | 1064 | 3414 |
| 41 | DarkTrent | 1186 | 1166 | 1015 | 3367 |
| 42 | Dman | 1222 | 1190 | 926 | 3338 |
| 43 | BogusZ | 1286 | 1103 | 947 | 3336 |
| 44 | Perfect Darkness | 789 | 1098 | 1439 | 3326 |
| 45 | Sniper | 781 | 993 | 1250 | 3024 |
| 46 | Kuja | 832 | 923 | 1221 | 2976 |
| 47 | BlueDogGreen | 892 | 1268 | 805 | 2965 |
| 48 | Col. Forbin | 988 | 963 | 976 | 2927 |
| 49 | PerfectPlayer | 854 | 1071 | 988 | 2913 |
| 50 | Ultimate M | 1099 | 922 | 857 | 2878 |
| 51 | Hindu | 743 | 950 | 1100 | 2793 |
| Rank | Player | Agent | Special Agent | Perfect Agent | Total |
| 1 | ParagonX9 | 27:46 | 38:35 | 45:02 | 1:51:23 |
| 2 | xXDarkLightXx | 28:29 | 39:06 | 47:22 | 1:54:57 |
| 3 | ExpertGamer | 28:06 | 39:38 | 49:06 | 1:56:50 |
| 4 | Marshmallow | 28:58 | 41:09 | 48:26 | 1:58:33 |
| 5 | Discombobulator | 27:46 | 40:10 | 51:00 | 1:58:56 |
| 6 | PerfectDarklich | 28:23 | 41:06 | 50:17 | 1:59:46 |
| 7 | Shock | 29:06 | 41:43 | 51:12 | 2:02:01 |
| 8 | SnapDragon | 27:40 | 40:21 | 54:25 | 2:02:26 |
| 9 | Sucram | 28:48 | 41:25 | 53:07 | 2:03:20 |
| 10 | DarkHawk | 30:00 | 43:08 | 56:26 | 2:09:34 |
| 11 | Infiltrater | 28:55 | 42:12 | 1:02:36 | 2:13:43 |
| 12 | Le Manchot | 29:14 | 42:06 | 1:07:06 | 2:18:26 |
| 13 | Falcon | 30:03 | 44:24 | 1:04:27 | 2:18:54 |
| 14 | Gamingguru507 | 29:20 | 44:25 | 1:05:58 | 2:19:43 |
| 15 | PillowHead | 30:31 | 46:41 | 1:04:08 | 2:21:20 |
| 16 | PrimeNumber | 31:24 | 47:05 | 1:03:51 | 2:22:20 |
| 17 | Steven | 30:18 | 43:41 | 1:08:37 | 2:22:36 |
| 18 | Ngamer64 | 30:49 | 45:47 | 1:06:03 | 2:22:39 |
| 19 | IronCurtain | 30:56 | 48:31 | 1:04:04 | 2:23:31 |
| 20 | KillMaster | 31:01 | 45:28 | 1:09:21 | 2:25:50 |
| 21 | TheJedi | 32:38 | 48:16 | 1:06:17 | 2:27:11 |
| 22 | SpyMonkey | 30:58 | 49:03 | 1:08:01 | 2:28:02 |
| 23 | DarkRyan | 31:52 | 49:49 | 1:07:07 | 2:28:48 |
| 24 | PDsurf | 30:07 | 50:56 | 1:08:04 | 2:29:07 |
| 25 | MODnike18 | 35:25 | 52:14 | 1:05:12 | 2:32:51 |
| 26 | GohanDZ | 29:54 | 50:46 | 1:16:51 | 2:37:31 |
| 27 | Ringwraith7 | 32:01 | 50:08 | 1:18:56 | 2:41:05 |
| 28 | Perfect Darkness | 39:44 | 54:15 | 1:10:01 | 2:44:00 |
| 29 | Trent Easton | 33:56 | 53:57 | 1:22:54 | 2:50:47 |
| 30 | Rudie | 31:26 | 50:57 | 1:28:48 | 2:51:11 |
| 31 | ShadowZero | 29:24 | 43:26 | 1:41:57 | 2:54:47 |
| 32 | Roco | 29:47 | 54:42 | 1:31:50 | 2:56:19 |
| 33 | Sephiroth702 | 32:57 | 56:11 | 1:27:21 | 2:56:29 |
| 34 | Kuja | 36:37 | 1:02:39 | 1:18:22 | 2:57:38 |
| 35 | Kazno | 33:13 | 1:00:04 | 1:24:49 | 2:58:06 |
| 36 | Mikers | 32:35 | 52:15 | 1:34:18 | 2:59:08 |
| 37 | Sniper | 37:17 | 1:00:20 | 1:27:37 | 3:05:14 |
| 38 | captZEEbo | 29:55 | 48:13 | 1:48:47 | 3:06:55 |
| 39 | DarkOne | 33:04 | 48:40 | 1:51:54 | 3:13:38 |
| 40 | Hindu | 36:54 | 59:10 | 1:37:44 | 3:13:48 |
| 41 | Wes McKinney | 30:34 | 48:11 | 1:55:29 | 3:14:14 |
| 42 | Sabin | 44:13 | 1:04:27 | 1:26:25 | 3:15:05 |
| 43 | PerfectPlayer | 36:25 | 57:19 | 1:48:46 | 3:22:30 |
| 44 | DarkTrent | 34:47 | 54:42 | 1:58:13 | 3:27:42 |
| 45 | Col. Forbin | 35:50 | 1:01:47 | 1:50:34 | 3:28:11 |
| 46 | BlueDogGreen | 34:56 | 50:26 | 2:10:06 | 3:35:28 |
| 47 | Yako | 30:55 | 43:42 | 2:22:17 | 3:36:54 |
| 48 | Ultimate G | 33:24 | 59:57 | 2:13:16 | 3:46:37 |
| 49 | Sim Threat | 30:45 | 57:46 | 2:21:55 | 3:50:26 |
| 50 | BogusZ | 33:06 | 1:01:27 | 2:20:55 | 3:55:28 |